Clark's powers are transferred into a classmate during a freak juxtaposition of meteor and storm. Clark must deal with being normal for the first time, and his classmate Eric is unable to cope with the new powers. Can Clark stop Eric's rampage without his abilities?

A flower that comes from a reopened "Level Three" of the fertilizer plant brings strange reactions from several people, including Jonathan, Lana, and Pete.

Clark rescues Lana from the storm, but discovers that the spaceship is released, while Jonathan is buried alive with the unscrupulous reporter who discovered Clark's secret. Meanwhile, Lex is wracked with guilt over his critically injured father.

After Lana is almost assaulted by a college student, Clark injures the boy while helping her. When the Kents are sued for damages that could cost them the farm, Clark tries to find a way out of the lawsuit. Meanwhile, Helen's obsessive ex-boyfriend comes to Smallville to win her back but when she turns him down, he stabs her, prompting Lex to take the law into his own hands.

While his father is awaiting surgery, Clark befriends a young boy, Garrett whose brother Vince just died from liver failure. However, everyone is shocked when Vince shows up alive and seemingly well - until his liver starts failing again. In a desperate attempt to keep his brother alive, Garrett straps a Kryptonite bomb to himself and demands that Vince be given Jonathan's liver or he will blow up the building.

After escaping from the Phantom Zone, Raya comes to Smallville to visit Clark. Raya and Clark grow close, and Raya reveals how to repair the Fortress of Solitude. Unfortunately, Baern, another escapee seeks out revenge on Clark and Raya for his time spent in the Zone.