The harrowing first 48 days in the lives of the tail section survivors are revealed. Flashbacks reveal the point of view of Ana-Lucia, Mr. Eko, Bernard and Libby and other survivors as they landed on the other side of the island on the beach. As the days progress danger hits their camp as well when "The Others" start taking people against their will. As the survivors race inland, trying to stay a step ahead of The Others, they realize that someone among them wasn't on Flight 815.

As Kate and Sawyer journey back to the main island with Karl, who is exhibiting effects of the brainwashing video, they argue over whether to go back and save Jack. On Hydra island, as Juliet's fate rests in his hands and a power struggle within the Others ensues, Jack recollects the time he spent in Phuket, Thailand and his relationship with Achara, a mysterious tattoo artist.

After abandoning the Others, Locke takes Sawyer on a trek through the jungle to help him eliminate a common enemy. Meanwhile, back at the beach, the parachutist Naomi has crucial information about flight 815.

Two outcomes of the detonation of the hydrogen bomb are presented. Flight 815 lands safely at LAX, where Kate escapes from the marshal and Jack learns that his father's body was lost in transit.

Jack, Sawyer, Kate, Miles and Hurley, struggling to save Sayid, face an ancient secret. Meanwhile, a fake Locke exits the chamber to everyone's awe.

After recruiting Sayid to his cause, the Man in Black issues an ultimatum to the Others: either join him or die. Meanwhile, Kate is reunited with Claire. In the flash sideways, Sayid helps his brother, who is in debt to a loan shark.

The Man in Black sends Sawyer on a reconnaissance mission to Hydra Island, where he discovers that Charles Widmore has returned to the island with a team of scientists. In the flash sideways, Sawyer is a lonely cop who is still searching for the original Sawyer.

The survivors split into two groups; one led by Sawyer, the other by the Man in Black. Sawyer's group travels to Hydra Island, where they are captured by Widmore's crew after Sun and Jin are reunited. In the flash sideways, the passengers of Oceanic 815 continue to cross paths with each other.